LOCUS       XM_017024013            5034 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens ATP binding cassette subfamily A member 9
            (ABCA9), transcript variant X5, mRNA.
ACCESSION   XM_017024013
VERSION     XM_017024013.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000017.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017024013.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5034
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="17"
     gene            1..5034
                     /gene="ABCA9"
                     /gene_synonym="EST640918"
                     /note="ATP binding cassette subfamily A member 9; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 19 ESTs, 12 long SRA reads, 9 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:10350"
                     /db_xref="HGNC:HGNC:39"
                     /db_xref="MIM:612507"
     CDS             32..4912
                     /gene="ABCA9"
                     /gene_synonym="EST640918"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family A member 9
                     isoform X3"
                     /protein_id="XP_016879502.1"
                     /db_xref="GeneID:10350"
                     /db_xref="HGNC:HGNC:39"
                     /db_xref="MIM:612507"
                     /translation="MSKRRMSVGQQTWALLCKNCLKKWRMKRQTLLEWLFSFLLVLFL
                     YLFFSNLHQVHDTPQMSSMDLGRVDSFNDTNYVIAFAPESKTTQEIMNKVASAPFLKG
                     RTIMGWPDEKSMDELDLNYSIDAVRVIFTDTFSYHLKFSWGHRIPMMKEHRDHSAHCQ
                     AVNEKMKCEGSEFWEKGFVAFQAAINAAIIEIATNHSVMEQLMSVTGVHMKILPFVAQ
                     GGVATDFFIFFCIISFSTFIYYVSVNVTQERQYITSLMTMMGLRESAFWLSWGLMYAG
                     FILIMATLMALIVKSAQIVVLTGFVMVFTLFLLYGLSLITLAFLMSVLIKKPFLTGLV
                     VFLLIVFWGILGFPALYTRLPAFLEWTLCLLSPFAFTVGMAQLIHLDYDVNSNAHLDS
                     SQNPYLIIATLFMLVFDTLLYLVLTLYFDKILPAEYGHRCSPLFFLKSCFWFQHGRAN
                     HVVLENETDSDPTPNDCFEPVSPEFCGKEAIRIKNLKKEYAGKCERVEALKGVVFDIY
                     EGQITALLGHSGAGKTTLLNILSGLSVPTSGSVTVYNHTLSRMADIENISKFTGFCPQ
                     SNVQFGFLTVKENLRLFAKIKGILPHEVEKEVQRVVQELEMENIQDILAQNLSGGQNR
                     KLTFGIAILGDPQVLLLDEPTAGLDPLSRHRIWNLLKEGKSDRVILFSTQFIDEADIL
                     ADRKVFISNGKLKCAGSSLFLKKKWGIGYHLSLHLNERCDPESITSLVKQHISDAKLT
                     AQSEEKLVYILPLERTNKFPELYRDLDRCSNQGIEDYGVSITTLNEVFLKLEGKSTID
                     ESDIGIWGQLQTDGAKDIGSLVELEQVLSSFHETRKTISGVALWRQQVCAIAKVRFLK
                     LKKERKSLWTILLLFGISFIPQLLEHLFYESYQKSYPWELSPNTYFLSPGQQPQDPLT
                     HLLVINKTGSTIDNFLHSLRRQNIAIEVDAFGTRNGTDDPSYNGAIIVSGDEKDHRFS
                     IACNTKRLNCFPVLLDVISNGLLGIFNSSEHIQTDRSTFFEEHMDYEYGYRSNTFFWI
                     PMAASFTPYIAMSSIGDYKKKAHSQLRISGLYPSAYWFGQALVDVSLYFLILLLMQIM
                     DYIFSPEEIIFIIQNLLIQILCSIGYVSSLVFLTYVISFIFRNGRKNSGIWSFFFLIV
                     VIFSIVATDLNEYGFLGLFFGTMLIPPFTLIGSLFIFSEISPDSMDYLGASESEIVYL
                     ALLIPYLHFLIFLFILRCLEMNCRKKLMRKDPVFRISPRSNAIFPNPEEPEGEEEDIQ
                     MERMRTVNAMAVRDFDETPVIIASCLRKEYAGKKKNCFSKRKKKIATRNVSFCVKKGE
                     VIGLLGHNGAGKSTTIKMITGDTKPTAGQVILKGSGGGEPLGFLGYCPQENALWPNLT
                     VRQHLEVYAAVKGLRKGDAMIAITRLVDALKLQDQLKAPVKTLSEGIKRKLCFVLSIL
                     GNPSVVLLDEPSTGMDPEGQQQMWQVIRATFRNTERGALLTTHYMAEAEAVCDRVAIM
                     VSGRLRCIGSIQHLKSKFGKDYLLEMKLKNLAQMEPLHAEILRLFPQAAQQERFSSLM
                     VYKLPVEDVRPLSQAFFKLEIVKQSFDLEEYSLSQSTLEQVFLELSKEQELGDLEEDF
                     DPSSLDCESMFCLLCL"
     polyA_site      5034
                     /gene="ABCA9"
                     /gene_synonym="EST640918"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cttaaaacct caaacctaga aacaggtcaa aatgagcaag agacgcatga gcgtgggtca
       61 gcaaacatgg gctcttctct gcaagaactg tctcaaaaaa tggagaatga aaagacagac
      121 cttgttggaa tggctctttt catttcttct ggtactgttt ctgtacctat ttttctccaa
      181 tttacatcaa gttcatgaca ctcctcaaat gtcttcaatg gatctgggac gtgtagatag
      241 ttttaatgat actaattatg ttattgcatt tgcacctgaa tccaaaacta cccaagagat
      301 aatgaacaaa gtggcttcag ccccattcct aaaaggaaga acaatcatgg ggtggcctga
      361 tgaaaaaagc atggatgaat tggatttgaa ctattcaata gacgcagtga gagtcatctt
      421 tactgatacc ttctcctacc atttgaagtt ttcttgggga catagaatcc ccatgatgaa
      481 agagcacaga gaccattcag ctcactgtca agcagtgaat gaaaaaatga agtgtgaagg
      541 ttcagagttc tgggagaaag gctttgtagc ttttcaagct gccattaatg ctgctatcat
      601 agaaatcgca acaaatcatt cagtgatgga acagctgatg tcagttactg gtgtacatat
      661 gaagatatta ccttttgttg cccaaggagg agttgcaact gattttttca ttttcttttg
      721 cattatttct ttttctacat ttatatacta tgtatcagtc aatgttacac aagaaagaca
      781 atacattacg tcattgatga caatgatggg actccgagag tcagcattct ggctttcctg
      841 gggtttgatg tatgctggct tcatccttat catggccact ttaatggctc ttattgtaaa
      901 atctgcacaa attgtcgtcc tgactggttt tgtgatggtc ttcaccctct ttctcctcta
      961 tggcctgtct ttgataactt tagctttcct gatgagtgtg ttgataaaga aacctttcct
     1021 tacgggcttg gttgtgtttc tccttattgt cttttggggg atcctgggat tcccagcatt
     1081 gtatacacgt cttcctgcat ttttggaatg gactttgtgt cttcttagcc cctttgcctt
     1141 cactgttggg atggcccagc ttatacattt ggactatgat gtgaattcta atgcccactt
     1201 ggattcttca caaaatccat acctcataat agctactctt ttcatgttgg tttttgacac
     1261 ccttctgtat ttggtattga cattatattt tgacaaaatt ttgcccgctg aatatggaca
     1321 tcgatgttct cccttgtttt tcctgaaatc ctgtttttgg tttcaacacg gaagggctaa
     1381 tcatgtggtc cttgagaatg aaacagattc tgatcctaca cctaatgact gttttgaacc
     1441 agtgtctcca gaattctgtg ggaaagaagc catcagaatc aaaaatctta aaaaagaata
     1501 tgcagggaag tgtgagagag tagaagcttt gaaaggtgtg gtgtttgaca tatatgaagg
     1561 ccagatcact gccctccttg gtcacagtgg agctggaaaa actaccctgt taaacatact
     1621 tagtgggttg tcagttccaa catcaggttc agtcactgtc tataatcaca cactttcaag
     1681 aatggctgat atagaaaata tcagcaagtt cactggattt tgtccacaat ccaatgtgca
     1741 atttggattt ctcactgtga aagaaaacct caggctgttt gctaaaataa aagggatttt
     1801 gccacatgaa gtggagaaag aggtacaacg agttgtacag gaattagaaa tggaaaatat
     1861 tcaagacatc cttgctcaaa acttaagtgg tggacaaaat aggaaactaa cttttgggat
     1921 tgccatttta ggagatcctc aagttttgct attggatgaa ccgactgctg gattggatcc
     1981 tctttcaagg caccgaatat ggaatctcct gaaagagggg aaatcagaca gagtaattct
     2041 cttcagcacc cagtttatag atgaggctga cattctggcg gacaggaagg tgttcatatc
     2101 caatgggaag ctgaagtgtg caggctcttc tctgttcctt aagaagaaat ggggcatagg
     2161 ctaccattta agtttgcatc tgaatgaaag gtgtgatcca gagagtataa catcactggt
     2221 taagcagcac atctctgatg ccaaattgac agcacaaagt gaagaaaaac ttgtatatat
     2281 tttgcctttg gaaaggacaa acaaatttcc agaactttac agggatcttg atagatgttc
     2341 taaccaaggc attgaggatt atggtgtttc cataacaact ttgaatgagg tgtttctgaa
     2401 attagaagga aaatcaacta ttgatgaatc agatattgga atttggggac aattacaaac
     2461 tgatggggca aaagatatag gaagccttgt tgagctggaa caagttttgt cttccttcca
     2521 cgaaacaagg aaaacaatca gtggcgtggc gctctggagg cagcaggtct gtgcaatagc
     2581 aaaagttcgc ttcctaaagt taaagaaaga aagaaaaagc ctgtggacta tattattgct
     2641 ttttggtatt agctttatcc ctcaactttt ggaacatcta ttctacgagt catatcagaa
     2701 aagttacccg tgggaactgt ctccaaatac atacttcctc tcaccaggac aacaaccaca
     2761 ggatcctctg acccatttac tggtcatcaa taagacaggg tcaaccattg ataacttttt
     2821 acattcactg aggcgacaga acatagctat agaagtggat gcctttggaa ctagaaatgg
     2881 cacagatgac ccatcttaca atggtgctat cattgtgtca ggtgatgaaa aggatcacag
     2941 attttcaata gcatgtaata caaaacggct gaattgcttt cctgtcctcc tggatgtcat
     3001 tagcaatgga ctacttggaa tttttaattc gtcagaacac attcagactg acagaagcac
     3061 attttttgaa gagcatatgg attatgagta tgggtaccga agtaacacct tcttctggat
     3121 accgatggca gcctctttca ctccatacat tgcaatgagc agcattggtg actacaaaaa
     3181 aaaagctcat tcccagctac ggatttcagg cctctaccct tctgcatact ggtttggcca
     3241 agcactggtg gatgtttccc tgtacttttt gatcctcctg ctaatgcaaa taatggatta
     3301 tatttttagc ccagaggaga ttatatttat aattcaaaac ctgttaattc aaatcctgtg
     3361 tagtattggc tatgtctcat ctcttgtttt cttgacatat gtgatttcat tcatttttcg
     3421 caatgggaga aaaaatagtg gcatttggtc atttttcttc ttaattgtgg tcatcttctc
     3481 gatagttgct actgatctaa atgaatatgg atttctaggg ctattttttg gcaccatgtt
     3541 aatacctccc ttcacattga ttggctctct attcattttt tctgagattt ctcctgattc
     3601 catggattac ttaggagctt cagaatctga aattgtatac ctggcactgc taatacctta
     3661 ccttcatttt ctcatttttc ttttcattct gcgatgccta gaaatgaact gcaggaagaa
     3721 actaatgaga aaggatcctg tgttcagaat ttctccaaga agcaacgcta tttttccaaa
     3781 cccagaagag cctgaaggag aggaggaaga tatccagatg gaaagaatga gaacagtgaa
     3841 tgctatggct gtgcgagact ttgatgagac acccgtcatc attgccagct gtctacggaa
     3901 ggaatatgca ggcaaaaaga aaaattgctt ttctaaaagg aagaaaaaaa ttgccacaag
     3961 aaatgtctct ttttgtgtta aaaaaggtga agttatagga ctgttaggac acaatggagc
     4021 tggtaaaagt acaactatta agatgataac tggagacaca aaaccaactg caggacaggt
     4081 gattttgaaa gggagcggtg gaggggaacc cctgggcttc ctggggtact gccctcagga
     4141 gaatgcgctg tggcccaacc tgacagtgag gcagcacctg gaggtgtacg ctgccgtgaa
     4201 aggtctcagg aaaggggacg caatgatcgc catcacacgg ttagtggatg cgctcaagct
     4261 gcaggaccag ctgaaggctc ccgtgaagac cttgtcagag ggaataaagc gaaagctgtg
     4321 ctttgtgctg agcatcctgg ggaacccgtc agtggtgctt ctggatgagc cgtcgaccgg
     4381 gatggacccc gaggggcagc agcaaatgtg gcaggtgatt cgggccacct ttagaaacac
     4441 ggagaggggc gccctcctga ccacccacta catggcagag gctgaggcgg tgtgtgaccg
     4501 agtggccatc atggtgtcag gaaggctgag atgtattggt tccatccaac acctgaaaag
     4561 caaatttggc aaagactacc tgctggagat gaagctgaag aacctggcac aaatggagcc
     4621 cctccatgca gagatcctga ggcttttccc ccaggctgct cagcaggaaa ggttctcctc
     4681 cctgatggtc tataagttgc ctgttgagga tgtgcgacct ttatcacagg ctttcttcaa
     4741 attagagata gttaaacaga gtttcgacct ggaggagtac agcctctcac agtctaccct
     4801 ggagcaggtt ttcctggagc tctccaagga gcaggagctg ggtgatcttg aagaggactt
     4861 tgatccctcg agtttagatt gtgagtccat gttttgtctg ttgtgcctat aaaggaaatt
     4921 tgaaatctgt atcattctac tataaagaca catgcacacg tatgtttatt gcagcactgt
     4981 ttacaatagc aaagacttgg aaccaaccaa aatacccaca aatgatagac cgga
//
